PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G08820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 833aa    MW: 90861.8 Da    PI: 6.2659
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G08820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11660708355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  OMERI03G08820.1 660 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 708
                      58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500539.286186IPR000626Ubiquitin domain
SuperFamilySSF542366.69E-52100IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.903.8E-7397No hitNo description
SuperFamilySSF813835.36E-14334403IPR001810F-box domain
PROSITE profilePS5018111.458334380IPR001810F-box domain
Gene3DG3DSA:1.20.1280.507.4E-12337423No hitNo description
PfamPF129372.3E-6339381IPR001810F-box domain
SMARTSM002569.7E-6340380IPR001810F-box domain
CDDcd000833.09E-11655712No hitNo description
SuperFamilySSF474594.58E-17655723IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796657707IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17657724IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-9660708IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10663713IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MKLRVRSMDQ RGGGAAETHR VQLPDTATLS DVKAFLATKL SAAQPVPAES VRLTLNRSEE  60
LLTPDPSATL PALGLASGDL LYFTLSPLPS PSPPPQPQPQ AQPLPRNPNP DVPSIAGAVG  120
PTKSPVESGS SSSMPQALCT NPGLPVASDP HPPPDVVMAE AFAAIKSKWS LVVGAMKREM  180
ENVGGADGTV ICRLVVALHA ALLDAGFLYA NPVGSCLQLP QNWASGSFVP VSMKYTLPEL  240
VEALPAVEEG MVAVLNYSLM GNFMMVYGHV PGATSEVRRL CLELPELAPL LYLDSDEVST  300
AEEREIHELW RVLKDEMCLP LMISLCQLNN LSLPPCLMTL PGDVKVKVLE FVPGVDLARV  360
QCTCKELRDL AADDNLWKKK CEMEFNTQGE SSRVGRNWKE RFGAAWKVST NKGQKRPSPS  420
FFNYGWGDPY SPHGFPVIGG DSDMFPFIGH PNLLGRSFGN QRRNISPSCS FGGHHRNFLA  480
DKYTRGNYMQ KPVTQPGRWF ILLVFHSLLC QYIVIGLSLM WYHLVDLVQM YSPPCSAAAS  540
SQGHCFAVGA NQLASLDLAM DFDEPILFPV HNASLQEGIQ FYNPTGDTQL SRNMSIDKCL  600
KGSKRKGSGE GSSSLHSQEE TGEMPQRELS MEHTGEKAGD ADASREEYVH VRAKRGQATN  660
SHSLAERFRR EKINERMKLL QDLVPGCNKI TGKAMMLDEI INYVQSLQRQ VEFLSMKLST  720
ISPELNSDLD LQDILCSQDA RSAFLGCSPQ LSNAHPNLYR AAQQCLSPPG LYGSVCVPNP  780
ADVHLARAAH LASFPQQRGL IWDEELRNIA PAGFASDAAG TSSLVNSDSM KVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351570.0AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631331.10.0PREDICTED: F-box protein SKIP22
TrEMBLA0A0E0CXJ40.0A0A0E0CXJ4_9ORYZ; Uncharacterized protein
STRINGBGIOSGA011171-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-45bHLH family protein